Visualization

leafviz is a shiny app to vizualize splicing results output from leafcutter.

To visualize an example without installing take a look at the leafviz visualization for 10 brain vs. 10 heart samples from GTEx.

Written by Jack Humphrey, David A. Knowles & Yang Li. Updated for leafcutter2 compaitiblity by Scott I. Adamson.

Installation

# in R:
install.packages("remotes")
remotes::install_github("scottiadamson/leafviz")

Data preparation

The data preparation steps for taking leafcutter output and visualizing it with leafviz have been moved to commands within leafviz, which is outlined in the leafviz README.